PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G010200.1
Common NameB456_007G010200, LOC105801772
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 238aa    MW: 25435.4 Da    PI: 4.4838
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G010200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.51.2e-1671119255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr  +++g+Wv+eIr+p++   ++r++lg++ t+e+Aa a++ a+++l+g
  Gorai.007G010200.1  71 VYRGVR--SRSGKWVSEIREPRK---TTRIWLGTYPTPEMAATAYDVAALALKG 119
                         59***6..668*********843...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.7E-2871128IPR001471AP2/ERF domain
PfamPF008473.0E-1071119IPR001471AP2/ERF domain
PROSITE profilePS5103220.5671127IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-1871128IPR016177DNA-binding domain
SMARTSM003809.3E-2971135IPR001471AP2/ERF domain
CDDcd000181.51E-2872128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MIQISAILHT NMTESDSSST NVPPKDQPPP PTVPIPDAPP QEQSPKPSST PLVSSKEGVS  60
WNSTSRKLPA VYRGVRSRSG KWVSEIREPR KTTRIWLGTY PTPEMAATAY DVAALALKGP  120
DAELNFPDMV HSYPKVGSTS ATDIRAAAAS AAASRLLPKA VTNTGSSSKN EDTTSTTAME  180
ITCSGQEFID EEELLNFPNL MVDMAGGMLV SPPNWINSPP SDDSPDNSDV DTLWTYT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2243820.0DQ224382.1 Gossypium hirsutum DRE-binding protein 3a (DBP3a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012488508.11e-172PREDICTED: ethylene-responsive transcription factor ERF027-like
SwissprotQ9CAN95e-49ERF26_ARATH; Ethylene-responsive transcription factor ERF026
TrEMBLA0A0D2T7081e-172A0A0D2T708_G
STRINGVIT_16s0100g00400.t012e-62(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19572777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.16e-34ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]